NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1045431

Scaffold Ga0209268_1045431


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1045431 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085463Metagenome / Metatranscriptome111N
F093652Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209268_10454311F085463N/ALRRYQQLQTNPKNRPNAWDLRRLVGSVNQVRFNDNKGEISFFGQKMIILRRDVVRVMRDALERLVADQAAPFLSYLASGIGIHEGSIFRDSITSTGPEQRAALENLVHSAFEDTNLGLGKVKIRQIDFDKASASVAISNCFEAMENGQSEEPNCMFTSGFLAGLFAEVLDKTVQARE
Ga0209268_10454313F093652N/ARRHRVTHARLKIDLEAVRSEAGRIENQDFFQSVKDQLKKDKDDQ
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Institute for Fundamental Biomedical Research
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