NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1122499

Scaffold Ga0209268_1122499


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1122499 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)653
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003280Metagenome / Metatranscriptome496Y
F067050Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209268_11224991F003280N/AASMDMHAKIEFLKSALASQQITLRLQTALAVMLFVLGVTVVILSLVNPGLILAESLKTGQTLGGTVVAASGFIPIFFSRRDKIVALHSLLLSYQHEQVGGLNPDAKLDQYFDQYFAMVQG
Ga0209268_11224992F067050GGAGGMKVSTSFTPADQFPVLLERIEHREKSARSRAVLYSLLPVALTVVLLGYTAASVRNAQKQVNALKTEATTYTTQIDTLKKNAETYKTQSQSLQGDT
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