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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026315 Open in IMG/M |
| Scaffold ID | Ga0209686_1000216 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29973 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (75.76%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001571 | Metagenome / Metatranscriptome | 669 | Y |
| F003458 | Metagenome | 485 | Y |
| F028476 | Metagenome | 191 | Y |
| F076915 | Metagenome / Metatranscriptome | 117 | Y |
| F095255 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209686_100021615 | F095255 | AGGA | MTTKIARPGRMTIYFASILTLTLRGVLSPFSPVSHEVVRRSAPAIVVTVEESVSLVLQDVWRIGLQPTVRRNIPVRTSTQPRRPISALQLTTGSGSVADASSVTHSLWVSRFCK |
| Ga0209686_100021619 | F076915 | N/A | MASSSTSAVQKEKPTLEQEVFKLKLEWMMAKNDDEKRRISEEIRRRIGFTPSKSQ |
| Ga0209686_100021622 | F003458 | GAGG | MAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPGFFQTNELGTSFITIIGIVSATVGLWIVKVDFDELRALFSRRDGWIFTVPLGLVSADVYLTLIVLSTNSQIVELNPFVSSAIAIGAAALVPFIVSYLALSQGLGLFMLRVGSYLFGPLKSSRYLPFVSICGAAAFGPASNLVLLLEPNAGLVAYLLGALGCVMLSIFLFTKVEKHDLGKPKFQRP |
| Ga0209686_100021627 | F028476 | AGG | MKLVTVWRKGSVLVPEYVPGRCNIGRRGRAIRLTTGLVFIAVPIVIGITVLKPVNHLLSLALVVPFYVGILACLEGSMSFCVLHAARGTYDLNEPHGFASRRSGTLEKVRSEDWKGLDRRKASMMHFESLSGAVLLALLLAFS |
| Ga0209686_10002167 | F001571 | GGAGG | LNLAVSYETGAGSYVELERKLALVHRVIVPDKDYPKEYATLVTDRRSIFIRQKKTRSSFVLRGEMRYGTALVTDVQPKTLEDYEKTSLKSLATDASNIAIPHDTVISLVMTKGEPNFRLQDLFIWLTMRRQGHKFNVYDFEMNYRDSGNQETKLRFYMVPLGVYFKPRRQTQTRETILREYAMDALQIFQKVLRNRIISS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |