NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1000794

Scaffold Ga0209686_1000794


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1000794 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15773
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008075Metagenome / Metatranscriptome339N
F013400Metagenome / Metatranscriptome271N
F104877Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209686_10007943F013400GAGMTDATLLTGMWIVAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIIFAFILTTASSVFGIFLLLLNPDLITGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPSANASA
Ga0209686_10007947F008075AGGAMRNSPEFVSAFQVSVTEGLANTLGAIVMQTLKNVLTYSFATYAGKPLELHQELSKVFGSGATILERMITKELFQRLSIRYSNELDFETSVNLARRDMSLSERGNN
Ga0209686_10007948F104877GAGMRILAEHKIPRSEIGARFDDVAKVLTDVFGSSSRLLIYKTVVELYEEYSIRATFGFYDSLRDQILFLRERVLADIIKPRHSSTVDDSIYITRVRQSS
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