NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209686_1000949

Scaffold Ga0209686_1000949


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1000949 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14497
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009672Metagenome / Metatranscriptome314N
F023823Metagenome208N
F073400Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_100094910F073400GAGGMRRDQLRRFLNSDVVGQLNNGLFFEGYVADKAGRVSVFDRDSRAHQISATQVKWLAKAVRYC
Ga0209686_100094911F023823AGGLGDEAKDNFDGALVDSVSAALDALGPTVKESIFLLLQRRNSISPDQIPKLVGEFVKALQDVLGPTSRVVEKLIIAGLIARNQVPANIAQGRSLLEVVGVVRMSQISQS
Ga0209686_10009493F009672AGGMSVRLLDTAPRWLRLTLGCSSGVLVVTGLGFFFGQLVLFDITPFTLLLHLVLALAVSSWILNLRIRIGPDRKPLLAIGVAVVVGSIWSSVQQWIGYFQTGVVSDIMLVAGATLMDIAGGCVIYTLFHLNILKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.