NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1002344

Scaffold Ga0209686_1002344


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1002344 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8957
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F007303Metagenome / Metatranscriptome353Y
F024516Metagenome205N
F081123Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_100234410F024516N/AFGLIVLLVYGLSAEYRSNAYQQDWISSNAPWLQYFVNGYLAAMLLGVFIGGGVLLGADYWRNRNKKTSLRTVG
Ga0209686_10023444F000611N/AMNFPTYVFATVNPGRSTKVVDELKHNSQIDIIAPVTGRWDLVLRLKPNTPQNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNIPGFVEACTVPGQFDIVALWQAKTSEDIVKNSFERVTNLQGLFSSETLLAHQPFFNA
Ga0209686_10023446F081123N/AMLNSEKLLKDLNLRLAHFGDPDLASARSLLPYSIPSMNAHQRCLEIAAKLVFKIE
Ga0209686_10023447F007303AGGMPSVMGTKEFLDFQQTIRDLERQVDILLREAATNGPSQRTRELTEKVYILAERAKQIRLPEARNQSTTNQSILEKLPKQFEEDFGKFKGLTPFVEWVRKQHYNATGHNLGRTYGSFGTKEISPGHHHGKLTMNTLEIRCDACGNESPQSERRDYPIHVLLHDHGQWEVCTGQSDCECQGYEGKGVRIGVNLSPERLGKGRA
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