NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1003162

Scaffold Ga0209686_1003162


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1003162 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7580
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014057Metagenome / Metatranscriptome266Y
F016133Metagenome249Y
F025002Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_10031623F025002N/AMMVDVRKEDENLSQGCNNSLYDAVDGDSKMNVEKFDDTMAALTFTAMAVTIALGFLFHL
Ga0209686_10031624F016133N/AMILISEESVVPALPKFMQTLDDTIFRELEKIAKKRGISIQELIRAVIVPEWVTGHNGSEAKEPAATKLNSWR
Ga0209686_10031626F014057N/AMSRFGLVKDKILCFVCAVKNIERTFNTYYELQEHLYRDHDMKKDPAMDIFNKYKPAVAKTPTAEQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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