NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1005578

Scaffold Ga0209686_1005578


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1005578 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5548
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031048Metagenome183Y
F069926Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_10055782F069926GGAMAIIVSSLFLVYWCEPGRVIWTKDGTVAAVHQYQDSNTGTNWNVLVYTYEQNDMGYLVNTGYVALNGPGTQGHGNYCWNDGNGKCLTAPLGFSLNQTLAVDALNDGNFMLKNRQL
Ga0209686_10055784F031048N/AIIITSLLAYNRITYEFPLAVGNTGQSALGPPTSAGVGIVFAMIVVAAILGFGAILSIFGSLRNVSNRISEIVVREPSPEDSTYGSQKEAEWEEASTQSESKATDDEILKALWHSKDKKTGTAE
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