NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1008367

Scaffold Ga0209686_1008367


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1008367 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4398
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012762Metagenome277Y
F014110Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_10083672F014110AGGAGVDLARLPGKIGSAVDFLREHVKSFNGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPPHLVTHTKQGAATTPPPAAATMPYLFPGAPVPVAPDKKRRKKS
Ga0209686_10083677F012762GAGLPTSHQYDPALGTIDSFPTILHGRASFSFDINPESLQKALVSALASLRANPKSREITLADRDGYLNGQLTFRLGIGNGDSFDILDSREEERVMNRIENRGPFKMLDLVFQLHYSVSDGRRHRVHEDHYILRLVFQPGRVEILVHHLKGVRRVEPDELIRLIIQELNVELTRERYSQIGLEAVDIT

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