NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1034900

Scaffold Ga0209686_1034900


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1034900 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F031048Metagenome183Y
F040029Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209686_10349002F002368N/AMPIQLTPTKIKGSKYLLIPKDLAQLLEIDDKSILNLTIEDTDRGQRLIYSIREKSSNPVQDKVYKKIG
Ga0209686_10349003F040029AGGAVALAPEFFVLLGTSIFLAVSVITALLDRHLPSILQYLFQGAAGAGLGELLLSQGLSSPTRVWAGIVYLAFALSSLVGVNIRLAIVRRGMNIASIFSQMMTVPVVMISALFLSSFLGNGGDLVFSPASILTIAVSVLVADLSIFGLLREYSRHGSIRSGLVSFTTSAAPASTGSVGPALDLHQHSAQGEDWEESPSKEKE
Ga0209686_10349004F031048AGCAGMTLKPERQVRLALLLVSTSVIIITSLLAYNRITYEFPLAVGNTGQSALGPPTSAGVGILYAMIVVATILGFGAILSIFGSLRNVSNRISEIVIREPSPEDSIYGSQKKAEWEEASTQGESKATDDEILKALWHSKDKKQVQPNS
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