NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209155_1002516

Scaffold Ga0209155_1002516


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1002516 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8438
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002657Metagenome / Metatranscriptome539Y
F026992Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0209155_10025161F026992AGGAMCHLSRFFSCLLMVFCVSLPASPLDTPLSDEAVREAYFLGQRHDASFLGNYIKFLPRPKTGPHISSVTFLTPFAQLAQISSNYVGNYSAQQALLDHRGQQEFVKITVEIYLTNSYGAMIPNPQSPRSPSSAPLIPRHYDFWRDFHVQVSDAHQVLSPSDIGGRPLYRCGRYGPCRPRGAAIDLEFPVGAFASDSVTVKVIPPEGDAVSVDFDLTRLR
Ga0209155_10025162F002657AGGAGGVSSAMRRLLSIIAAALLLSQGSFAFDTPLSDQAVREAYFLGQRRDETMAAFLNKYSKYLEAPKTGPHVASVTFFTPFALLVQQSSQHTSGYSAQQAALDHRDQPEFVRIIVQIQLTNSYGAYIIRPTSSRSGSSAGFVPRPYDFWKDFDVQVSSKDQNLRPFSSSGQPDVLCSYEGGCELTGATLQFDFNAEDFASGSAVIDVIPPEGDPLSVDFDLGHLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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