NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209155_1011521

Scaffold Ga0209155_1011521


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1011521 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3845
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015710Metagenome / Metatranscriptome252N
F024389Metagenome206Y
F035691Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0209155_10115213F015710N/ALSVVFFVLAIISLSILTLYLITDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGV
Ga0209155_10115214F035691GAGGLVEPWKLNNIFKLFLLSFTTVFLFLIFVLNEIQVSQYLLIVLAAGTIVYLVISFRVIPEAQGPPTTPQHLHLPSRTHLLAIILILSLFASSYVIARTLTTPSPFQLVKFQYLVLPNGEVLSMSPLQPSNECAWLESMNVTTQQRARQLGLPDCDYVAWYHRTSPPTLFLEFQNFTELTYNLSNTTARSTGSELLCFSLSSQSFQCWVPPARVSHLK
Ga0209155_10115215F024389GGAMKKRKFLSLVIVLATVIVAAILGYIYYEYIPRVLVDDTQTLKENHIWQFDLFVLGNRNVDITVSTAQYLVYVTFWYQQNSAATTYLIDKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGETVTTVVHVEVTS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.