NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209155_1015232

Scaffold Ga0209155_1015232


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1015232 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3295
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209155_10152324F035684AGGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLILSVCSVAGLNVYLAVVRKKTAIASAFSGTITTPTVTVSVLSVSSYLSGVDVRFTPLTIVILIVPALLVGVGAYGFLHKTFKRIGKSTGPALSPASSSAPVEMPKIHVPLDLKDILGEWEESQKKDRVA
Ga0209155_10152325F002368AGGMAIELTPTKIKGSKYLLIPKDLARLLEIEDKSILNLTIEESSKGRRLVYLVSERVPHHTE
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