NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209155_1016578

Scaffold Ga0209155_1016578


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1016578 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3141
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029233Metagenome189N
F035894Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209155_10165781F035894N/AVNAFIVEAIEEKFQRIDAVESVSESEARIAADFSRIVREVRSVHNTQQAQYALLDALTKYVSTCVVEPPQDLLVSARARGKLRYEKLVREAAKTITGECENLLLESVASAD
Ga0209155_10165783F029233GGAMPKPRSSRPVGVRLLHAVDAYLRKKQRGKGDLSKLIMEALSRTDLRVVPLITIHGRRQPTVAKVTQIVMPNDIRQLIEHWSENRRCSMNELLNSALVGSLLKSRPEKNGKRTRPGQTPTFDTMTAKEREGFFARLLALAGQEPGPDPRSREGNYYEWDPKLEATVEVAVDGRRYLMERVAPGEMVRARELKGSAFVERPTPRPGR
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