NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1000082

Scaffold Ga0209154_1000082


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1000082 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67133
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (51.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001940Metagenome / Metatranscriptome614Y
F075935Metagenome / Metatranscriptome118N
F082414Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100008211F001940GAGMLSGKNVKAKPKGTSIEGKDATEIIAGVQAMYEKIPAFIRPMLPALPDILRRIPSSAGKYTLNEIIQLLDEAYETGRLKR
Ga0209154_100008262F082414GGAMSQVRQAHLPGNYELYDASSNKLGPVVCKECWEGFKKETTAPLDTVWVSFKGEQMVWWLCQNHADKLKAQKKSGDIQFLKLAKGAITSPRL
Ga0209154_100008278F075935GAGGVLFTKLARLIIRHNRAVFVIWLVALVLSIPAILQVQSVIVYNETAFNPKNSESSLAQNIVSNEFSIDQGSSVIVVITASDIRGNDVRDFTLALNRTLHNDGKLSNINNITSIYDIYSQLLLGYTSVVHLQLYETKNATTLASNIEFGVPSTYVSQWISLVNSGSGTIDQAQLAAYNGQAYNSSWPIVSAQTPTAYQSVAFNYLTLFYKSWNQTFTATTYTPLQLFVGAFARAQNVTKGSPFLVTQPSYYNITLPFVESLPFDAQTLSLFVSAARFFNIYGGGSGIGC
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