NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1000858

Scaffold Ga0209154_1000858


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1000858 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18920
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001571Metagenome / Metatranscriptome669Y
F052525Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100085819F001571GAGMSNVMQERRLVLIHRVIVPDEAYPKEYAILVTDRRSIFIRQKKTRGNFWLRREMSYGTALITDVVPKTLEDYEQTSMESLTADSANLTVPHDALISLAMKKEEQKPRAYDFFVRLTMRMQREEFQVYDFEMNYWQTPNAQVAIRFYMVPLGAYFKPRRQTQTRERILREYATDAFEIFQKVLPAKIISS
Ga0209154_100085823F052525GAGLAPPKTPYDPRALKRKISSQILELPGVSGIGVPKGRLTVYLEVDSEDIRNRVREVLRAVSPEAGVVFMVTGKFSKQDPE
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