NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1001442

Scaffold Ga0209154_1001442


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1001442 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13928
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016134Metagenome249Y
F018901Metagenome232Y
F039072Metagenome164N
F053955Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100144217F018901N/AMLKTKIVAFLGLTLMLSSLLLGSRTLGYQRAILSLQLGGLFLVLGGFFRFFDNHPLHDALVGLYDLEATAS
Ga0209154_100144218F016134N/AMPKPVLTVELKELHDRASEATQFLKSKVEGKMRTKGTQLEIEGAKTKQVKLQLHKFLHHQGLDHYRVLSQSGVLEVTPLEKHVLHPMEHVGSPPTAAQTTPYLFPQTPALTPEKKKTKPKHKHE
Ga0209154_100144220F039072GAGGMTLLGAATIVDSIILIKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGMVADNWPTIRTRR
Ga0209154_100144221F053955GGAGGMETRPRISENFLTTTELALTSTLAAVYVVSTFFPLTPFIGGPSFITLEIVMLPVIAAVLRPILAMVTVLVGSLGMALGQPSFYQTFGLPGLLVPILAVALGSIAFHYEWGPIAPWAYVLAGAIYYILFSKGGTLFWLAPYILVIVSLPAVLKTREPYRIGLLALYTAMSEQVTMNILSISLLNFPGPIWTIITPFMLTERTVATLGGTAIIVALKSQLGTRLELGHVLREVK
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