NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1001446

Scaffold Ga0209154_1001446


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1001446 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13903
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F009323Metagenome / Metatranscriptome319Y
F010455Metagenome303Y
F016382Metagenome / Metatranscriptome247Y
F024995Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100144615F010455GAGLGKESEQTPHEKAEKTLLAIKEFKRYLEGVEKDLSGMSKKFSNREIAQGVGFAATGIHEALTYLGIVKKVVEKTERIFAKRNHVSDKETDGPLRASGDPQ
Ga0209154_100144618F001093N/AMASDTKSRESWTEQEDSGRSLTPMNQLRLSRVFRFNDPQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFSFLAHVLGHELGGTTPRPIRTVVDLQVPDDEFQNYVNTAKTLSLTDEELADTVLDVGINWEHFVASNDNLLIPEHPLKITDVQMQEKIDSLDFITEAFVKEINLRSFEKQTGTKTKKGHE
Ga0209154_10014465F016382GAGLDKEDALRSPLTEIFYETLGYCFGKSLQETLGPHVEASIYDLLRRSGIRKEDVSNRFDDVVQALTSTLGTCSRVVIHRTMVEMFKEYSQRLDFSYTDSLRDRLAVLKEAVVANHVLPRRLHDDSTFDSVEKPDWTGPDTPKGQAYSSLYPMKKGVKT
Ga0209154_10014466F024995AGGMMPMAMRIRDSSSTNPHGDFGSVPRSTDPDRRFAAEKAFSSVLVSTVREAVGNALGHNVLEILTAKGLLDDASNSKEFDRKLQSIFGNGAAVLERIVVKDLNRKLGIPYNSEARLDYEKSLETAKEVCFVESKLK
Ga0209154_10014469F009323AGAAGGMLDPVVLPTLYFISVFQLILQVGVVFYAYRVTKLTGSFRAWTLIIVAFTILTVRNVVSLFLSLSLPADQLASLIDSVGVVTIIASSAVNVAAGVALFLGMFGLVKRFENQSKTP
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