NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1001851

Scaffold Ga0209154_1001851


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1001851 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12169
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N
F095224Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100185111F095224GAGMRDIELVRDLKNEVFSTRLEADPSEPVKTLARPLVSEIARDSEPVKDLNSEIFSAKTEDEPSEAVKATVRPFNVELVKPRELDKDLNNEDFSAKLEADPSESVKDLTKPLV
Ga0209154_10018514F002368N/AMAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSVLDLTIEESETGQRLVYSIRERPHHLAD
Ga0209154_10018515F035684GAGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAALGLGQLVVTEGFGTSSVIDASRFWISIFYLTLSVCSVVGLNVYLAAVRRKTAIASAFSGTITTPTISVSALFVSSYLSGVDVGFTPLTIAILIVTSLLVGLFSYGFLHKTFKRIEKSAGPELSPASVSAPVETPKIYESLDLKGVLGEWEESQKKDQVV
Ga0209154_10018516F034123AGGTGGMKGMRGLFDLGGKNVLRLGLLVFSTLLIVGGSVFFYDRLVYERALSVGGVITGSSSTTQTGLNPAPGTILILAVSAVLISLSVFGFLREVFRGKRNRKTAAKESSPTAMVSLPLEIGPPLQLPSMKRDWEESPKKEEGKH
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