NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1002465

Scaffold Ga0209154_1002465


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1002465 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10331
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017200Metagenome242Y
F018153Metagenome236Y
F029395Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_100246512F029395N/AMDVVLSGNGKREGLAYSEVREAKADGRLKDLLVGLIDSSKALDVRVWLDGVYTDIGDERVLGDWMNDRDVYFKVEGRVDKRNGS
Ga0209154_10024652F018153N/AMRRSSIFSRRKTLVLALLATAVLAAMTYGAVTYQTPYGCGPNGVATGPSIDWQVLAEPCIYIYFTGIVGGSVFLILLIPVPEKKTEASSVENKS
Ga0209154_10024657F017200N/AMQPITYSVPKGLRAGAIGGFIGAIVLGTFGEIGAIALNQELFYTTIARKLAFGDFSVLGGWALHLLVGIIAGSLFIGATAAIRSFALTTTRKAVWVGILGGVAIWIVVYVPVTGLLVPDDLTNTTFAGGAFVLHILYGVVTAIVSLSLLRRTVKTKATT
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