NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1003536

Scaffold Ga0209154_1003536


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1003536 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8464
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F016379Metagenome247Y
F042822Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10035361F016379N/AMAQFIVIATLLAGFSNEYLSNIYFRIWVDGNFPQLGLLLTGQADALLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLAQSSDLLPNHATRTTIVEVARETPDQVLGELDKHDF
Ga0209154_10035362F011833GAGGMKAFIASFVKGQVLLLAPQPILLLLIILNKVSLYYCAPVIVSLAVLWGWFDYSGKVQRRGASVLKKLERLVDDFGWLNFQEGGGAGNEMVVSLLDKASFGSSTLTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTNLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVAETKVRALEVDPWFKTGTEILETKQSPQ
Ga0209154_10035367F042822N/AMLLITIILLIVLFYWRLFVVRDLNLLETVFWMIFPDLASFIPIGLAMRGAKEWLQWGPGLYNFFHTLLVWIPVFAIWSMSSGAIQWPLLGWAGHITADRSVGYYLRASTRRPD
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