NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1005866

Scaffold Ga0209154_1005866


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1005866 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6304
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F004048Metagenome455Y
F016137Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10058663F002498N/AVKDQQRIYSLNKGVESLSKEEHGLFFDAVQSLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLDIFLIASISLSAKAMGDMRTDHEFESKMFVSREKLADAEERIIKSFGVQDSILPFPDLVSQLTKRQIESMADRFAERGLVSSNEREELVHRSYDYLDAAVEKGLGPKMSYRGRAAGVMLKAVRDLGLEVPEIDIARAAGFDKRSMAINTDIIDALLKDSST
Ga0209154_10058666F004048GGAGGMLPEFLKGKLSLDEWKILIALHLVRFKAYNQTRMSRLLGKIALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPIFLIAALWIRRSLRKSLKRREFELDRNVAKQLGTQQVSQVLEKLEELDQKRIPADIRLFLLPYVAYWNPSIKERIRELGNPSLEDLPRPARIPKIGLRGRVIIVLVGFGIFWGAGLVESNFFARGQTMIVCRDVTCAALVVIAAVGFWMAIIGGISIVVWILRRFL
Ga0209154_10058667F016137GAGMAELDVEIGRVQHEMNERQAKGKPTLDLEKRLEELESQKHELVERIEALWSA
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