NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1007423

Scaffold Ga0209154_1007423


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1007423 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5511
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002657Metagenome / Metatranscriptome539Y
F026992Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10074232F002657AGGAGGVSSAMRRLLSIIAAALLLSQDSFAFDTPLSDQAVREAYFLGQRRDETMAAFLNKYSKYLEAPKTGPHVASVTFFTPFALLVQQSSQHTSGYSAQQAALDHRDQPEFVRIIVQIQLTNSYGAYIIRPTSSRSGSSAGFVPRPYDFWKDFDVQVSSKDQNLRPFSSSGQPDVLCSYEGGCELTGATLQFDFNAEDFASGSAVIDVIPPEGDPLSVDFDLGHLR
Ga0209154_10074233F026992AGGAMCHLSRFFSCLLMVFCVSLPASLLDTPLSDEAVREAYFLGQRHDASFLGNYIKFLPRPKTGPHISSVTFLTPFAQLAQISSNYVGNYSAQQALLDHRGQQEFVKITVEIYLTNSYGAMIPNPQSPRSPSSAPLIPRHYDFWRDFHVQVSDAHQVLSPSDIGGRPLYRCGRYGPCRPRGAAIDLEFPVAAFVSDSVTVKVIPPQGDAVSVDFDLTRLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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