NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1007542

Scaffold Ga0209154_1007542


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1007542 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5459
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F025944Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10075423F025944GAGMRMSLSTTEQSNHSYRAIPGYLKIIILAQAATILSLTVLMYQEYLNDAYFQQYVISLLQTNIIADALLSMVTMSVFALGTFTLMGSMRSGRGESKEWHLLSDEAKAPSMPSLPVVDTVERATRPRSTSRRPRARKPRADMDKLLDSMRYFADDHREE
Ga0209154_10075424F001093AGGAMASQTKGRESWTEENSPRTTIRESSPLKLSRVFRFVDPQTSASQISDFPDSNPSGDTPLEVRMKHFTEIENFTFLGYTLAHELGGTTPTPIRTVTDLQVPDEEFQNFINEAKSATLTDEELADTVLDVGINWEHFVASTDNLLIPEHPLKITDVLMQEKIDSLDIITEAFVREVNLRSIEKKTGTKGRQS
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