NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1010456

Scaffold Ga0209154_1010456


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1010456 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4561
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_101045612F004381N/AVHDRVALPDPVTLVGVTVHEVLLVVRLTTPPNPLRAAIVIVEVPAEPALTVTLVGLAVIVKS
Ga0209154_10104564F004381N/AVHDSVELPDPVTLVGATEHEVLLVVRLTTPAKPLSPVIVIVEVPADPANTVTLVGLAAMVKSWTTNVTVTE
Ga0209154_10104565F004381N/AVDAAANVQESVALPDPATLVGATEQEVLLVVRLTTPANPLSAETVIADVPADPALTVTLVGLAATVKSWTMNVTVTE
Ga0209154_10104566F004381N/AVDAVVNVHDRVALPEPVTLVGATEHEVLFVVRLTTPAKLLTAVTVILDVPAALALTVTDVGLAAIVKS
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