NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1001081

Scaffold Ga0209471_1001081


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1001081 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16699
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002514Metagenome / Metatranscriptome552Y
F035435Metagenome172N
F037658Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0209471_100108110F037658AGGMTTAVNLSLDQSLIESIDAALSALGTSTRDSILTYLRKKYSMSLQDIPQRMDEFLQALNRLLGYGARVIEKLVIARLVETHEISLSEARGRSLAEVVYLANMNRTTDDRQLVNSS
Ga0209471_100108111F035435GGAVAPRKNESEAIGRVLDPIVLPTLYFIAVLELIFQAGVVFYAFKVTRITGSFRAWTLIIVAFSLLTIQSVVGLVLTLSLPTDQIASLISSVGETTTILSSMVTAVAGALLFLGVFGLAKRFESQAKPSA
Ga0209471_10010818F002514GGAGGLRDRDVMNLLDQIELYVLRIGEERIAQKDYWLFIYRSMKSGLLMTKAMERHLQYKLKELGIKTH
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