NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1004413

Scaffold Ga0209471_1004413


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1004413 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7805
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012103Metagenome / Metatranscriptome283Y
F021508Metagenome218N

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10044132F021508N/AMTTFWLSAGAAAAVILAVLGVLQYARSGANLLVSVRQYEFELPATAQQAFARLAERISPWSDEPLVGIGDDVAGGVEAVLKVFGIRVGPRLGIFWKIMLRNRGRAPAEAVELHVPEAVQIEVRRASMGDGIAEEWVVLRDRAVIGKVRPGESVRVLAWGPRVSEEPSVTQSRGRAAVRVLKMVRSRWVRLAQVQLALLVVILLYVVIRLTWLH
Ga0209471_10044134F012103AGGGGGVWVIPSWAIGTAFVICVVACAQVVVRRLIGSTDKRAGQNPTEQALEDMQRRLAELEERMDFAERLLAKERTAERLSPPHG
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