NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1013788

Scaffold Ga0209471_1013788


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1013788 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4189
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004601Metagenome / Metatranscriptome431Y
F046289Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_101378811F046289N/AVLVQDKVEPWLAPRTILVGARVQVNPAGLTLDVSATVPVNPFTGATVMVDVAAVPALTATEVGLAVTEKSVTV
Ga0209471_101378812F004601GGAMLAGVRVQVSPAGDTEDVRATVPVNPWTGATVMVEAPAAFASAVTLVGLAVTVKSLTVTVTVAV
Ga0209471_10137883F046289N/AVQDNVEVWDAPRTMLAGVRVQVSPAGETDEVRATVPVKPFTGATVMVEVAATPAFAAAVVGLAVTVKSVTV
Ga0209471_10137884F004601AGAAGMLAGVRVQVNPVAGDTVAVRATVPVNPWSGATVIVEVPAVPALAVTLVGEAVTEKSLMVTVTVAV
Ga0209471_10137885F046289N/AVAAVEEHDKLEVWLAPRTMLAGVRVQVRPAGATEEVRATVPVNPLTGATVIVEVTAVPAVVVSDVGLAVTVKSTIL
Ga0209471_10137887F046289N/AVLLVHDNAEVWDAPRTMLAGVRVQVRPAGETEEVRATVPVNPLTGAIVIVEVAATPTFTLAVVGLAVTVKSCTVKVTVAV
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