NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1020379

Scaffold Ga0209471_1020379


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1020379 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3350
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004353Metagenome / Metatranscriptome442Y
F068072Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10203791F068072N/ARDGAEFRGTLTAPLVLEGEVIVHSEAEVRGLLVLLRSKTHPGGFRYELLVTGLTDRGKSYDLTASLNPSFVDPAAQPDADSKSATK
Ga0209471_10203792F004353AGGAGGMKNVGRVVFSTLASLSLAAAVWALPPSATHGTASVLSSGPNAPQEQSISGKIASVEKTSFTLTVGQSQTQNLQQDPNSPKTMTFMIDKNTTIDGSLKVGASADVTYRQEKGSNVAISVRVTS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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