NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1022824

Scaffold Ga0209471_1022824


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1022824 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3135
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009323Metagenome / Metatranscriptome319Y
F016382Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10228242F016382AGGALRSPLTEIFYETLGCCFGKVLLETLGPTVQASIYNLLERSGIRKEDISNRFDDVVQSLTSTLGTCSRVVVHRTMVEMFKEYSQRLDFSYTDSLRDRLALLKEAVVANHVLPRRLRDVSAFDSVEKPDWSEGSGAPKGQAYSSLYPMKKGVKT
Ga0209471_10228246F009323AGAAGGMLDPVVLPTLYFISVFQLILQAGVVFYAYRVTKLTGSFRAWTLIIVAFTILTVRNVVSLFLSLSLPADQLASLIDSVGVVTIIASSAVNVAAGVALFLGMFGLVKRFENQSKTP
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