NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1087806

Scaffold Ga0209471_1087806


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1087806 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1363
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F038388Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10878062F000249GGAGGMKKVAWILVFPLLISVLSRAQNEPSEPTATDSQRIEAQHRVLFPSDMFWGWAEFNLAPPHNEIDPNLCAGNAGQYGGVNAPCSLFARYMLSGMLEVRPFGRGPLRRFMVFGAPAFLFGKTIPKTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARNTNLGVADLGNNGPWGRYMTVGVHKSFGTRRW
Ga0209471_10878063F038388GGAGMPQEISVSYQAIKSKVYRLIDALVVGEKTEVEVQESIRRWWELIH
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