NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1107365

Scaffold Ga0209471_1107365


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1107365 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023811Metagenome208Y
F041660Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_11073652F023811GGAVSVIFIASLVQVIRGRVLLLRPRRGEAFASIFFAFMATGLVVLVYNVDPISNWTLLAGVWAGSEAVILYLLQNQRKNEKEFQKHPVAFPNPEGGGILGEYVNRPWQSELAELGRRYPSKKTKKHKKED
Ga0209471_11073653F041660AGGAGGMVSHETKRILGLTSLAFILIIILARALPLPFPGSHSLAFPRNPGGPSPYTPVLIFSDNVSLTSRTPTFNLTLTQSHSYMWKFNVTFGSVKINLTDPRTGSIFWTVGPYSSGQWHLNGTGFVTFNWTAPASTYYSLVLVNQNLSQWLPNGFVHTSPYSVCDIHVWDLDTRAPLRVIF
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