NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1002862

Scaffold Ga0209647_1002862


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1002862 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13741
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014771Metagenome260Y
F021893Metagenome217Y
F073304Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10028622F014771AGGAGMRAKGSITQLVRKARPGYILGEDGCLVAFDESALEGLDPHELSIGDWVEYEELDRMEGRRASKIKPLIQRAEE
Ga0209647_10028627F073304AGGAMATRSWHSRGLPAWRIWLLSCLGRLRNIKNLASGEFPFAGGLVLLLSASILWREFPMAVTAAGLVLILQEIADPSPLFLTVPWEALEFVLSRKVRANHFWLHRTQGLLRESGDSLAKIDGCATRDGFFIIGAAFNEAQIQWASQSAWRATCQKPYAKEAATGCKTMRFLLALWLIAGGFAALSLFRGVDLGSGLLLCALCGAAGQLLAEPAEKLLGPWAGRVARSTTETWPSRLEVESLAIPRFLWFKRSLLFQVRRMPAQESNGG
Ga0209647_10028628F021893AGGAGVPDYYTSQQLAQTLGIAEATIAELQTKGLLQPTVKDGRSFFSSRQAHCLRAALRWARKDKTDLQEAFARVEERWLAHTSATKD
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