NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1011341

Scaffold Ga0209647_1011341


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1011341 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5956
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059400Metagenome / Metatranscriptome134N
F083003Metagenome113Y
F083149Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10113414F083149N/ALIFGHVVCDDSTSPVSAFYKGESQEKKLPGDWKEQRFLPGSPAHVMLGGSWGFLFSQSHVVVVTTPSVSDATSSTVAKIANHGSI
Ga0209647_10113415F059400N/AMKVTIHNERIDITELPLGNRIQWNPLLDELKSEHRPGVYQHGKRMGMNIINGKLHAYIYRTAKTPPDSEILEILNRHGIA
Ga0209647_10113416F083003GGTGGVPDCKKVIVGDAFELPSRDFNYYRDLFLVWPFFLFTIVGLVSLFGVGHDYRDGAKFVALSLVTILLARERFVLIGGALGICAVQSLLSFFLRHNWVGLAVAIPTGTLFLVLIRSLKDYKPSYQRLNGLRIIDALVSLLSLGFSFLVFRWIPR
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