NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209647_1047131

Scaffold Ga0209647_1047131


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1047131 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2354
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10471312F106044AGGAGMPNLTYNATWDFNPGDTVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLAQTDSATISVVVTI
Ga0209647_10471313F007488GGAGVYEESDLGALRAIHARQGFGYAFPDLSDPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPQIAQKFGKRLARLGWVRDDVWTPYCKKLS
Ga0209647_10471314F002853GGAGGMGRGAQGQTQSLTDNQLNQTNALNQQLLGQRQSVGNLVVPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0209647_10471315F009917AGGAMGTSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIHLDEPPMVNYVDLRNGGRHR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.