NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209131_1002447

Scaffold Ga0209131_1002447


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1002447 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12581
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001734Metagenome / Metatranscriptome644Y
F003010Metagenome / Metatranscriptome513Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_10024475F003010GGAGMARLGKNALLDSVPLLVLLGLLAGALGGLGIGLIQSKGSSSTASTSK
Ga0209131_10024479F001734GAGMPYRFPSLRSAAPIVLLGAPLIVLLCVLCPLPASAQDDAPSLGDLARNLRKDKLQQSPQQQSDPARPVIDNDNLAQVTDDAKKARPVKPDKTVFSIDPSSNTLKVSSPDVTCSLSFNARASSLLIKPVLIEDLPLTELLKLDGPGSIQDESLQMEVFNGTDWDIREITIGLTLERKPGQNAEVAARARVIPAAEGLAPITVERRSDVTLLYHLKATAKPFSTTAFHENIGITPGADEDWRWSIVEAKGIRPSQAQSAPDSLQEPLFATPSPFAPESNERPVTPGAIAIPVAPTAPSIPEKSAPGKTNADKVLDPEPTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.