NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209131_1003461

Scaffold Ga0209131_1003461


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1003461 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10482
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000289Metagenome / Metatranscriptome1365Y
F010303Metagenome / Metatranscriptome305Y
F014480Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_100346111F010303GGAGGMLDALNRAERCRDLAEECRRVAALCASTEMRNHYSRMAEHYSTLADAEELGKRVYGH
Ga0209131_10034616F000289AGGMLQRSTLLVLAVLLQGVSCPPASAAEREDVRKVVNLVTSVKMPYPESLTRNRAKTERVWLERGGGTTTGCIGLEERRWCYEYIPPEGNRLEMLRIRNEPLRGVYIGALYYYVDDFDLDGLLDVGSTTEIEAFDRPRRTPIANVTRFFHRGTKRGEQFQPEYQKMYDEGIQIALKYFGE
Ga0209131_10034619F014480AGGAGGVLDALNRAERYRELAEGCRRLATIGFSVETQSHYLRMAEHYSLLADVEEQGTQVYGD
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