Basic Information | |
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Taxon OID | 3300026320 Open in IMG/M |
Scaffold ID | Ga0209131_1006406 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7541 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000823 | Metagenome / Metatranscriptome | 875 | Y |
F000825 | Metagenome / Metatranscriptome | 874 | Y |
F062871 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209131_10064063 | F062871 | GGAG | MRLFALALAAVIAAAAPAQAAWKAQKYPQYGFGVDFPAEPKMSKGEYRGVIAGRMPTTVIGAEEDGTIYQVVIVDFKNRLAETPVLLEEAIFLATQEGKLVSDVTARTDNGAKFAKYGRRVTVMTKDGGKKITELYLVNGLLLMFEGVITPKGDLENPEAARFQDSILYNLDRDWTIPPPLPANAADGPAIRAPIRPGQAK |
Ga0209131_10064065 | F000823 | GGAGG | MRAWTLAVLASTALAAMMTPASAAWHGYISHSLGFAFAAPGELKVEKGTYKAAVGGTHDSVIFRAVDDNIEYKAIVIDTTAEANNAATVLGEAEYIFQDGKKVLMDTFGRVDGKFGRKLTVDLPNKAGRTTAAFYFVNGRIVSLQATVLPANGDYDTPEMGRFIDSITFYTVRAANDATELTLPK |
Ga0209131_10064066 | F000825 | GGAGG | MRATQLLISAGMALAVMTAPANAAWHSYISRQLGFSFEAPGEVKTQIGTYRGSAAGPKQTIVYRSVDDNIEYKVTVIPSFHQAQAEGANILGEREYTFMGDKKVLMDTFGRVEPGKDSVYGRKMTVELPKNGGRTTAAFYFTKGNLITLEATVLPANGDYTSPDPGRFIDSIAFVLSRTQPGATELQAPEVE |
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