NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209687_1127407

Scaffold Ga0209687_1127407


Overview

Basic Information
Taxon OID3300026322 Open in IMG/M
Scaffold IDGa0209687_1127407 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010312Metagenome305N
F064566Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209687_11274071F064566GAGMRLRNLPYVTLWAVKFDEEKNLYKEILGLPVTEENANFILFDTKGSRLAFHRLKKGSRLDRQTVELHFEVDDVDEV
Ga0209687_11274072F010312N/ARVFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANIIIFILGLFLVLGLYWVMGVYERKILYENHRSRPAF

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