Scaffold Ga0209472

Basic Information
Taxon OID	3300026323 Open in IMG/M
Scaffold ID	Ga0209472_1000051 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026323 Open in IMG/M

Scaffold ID

Ga0209472_1000051 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64821
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (66.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

64821

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (66.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016790	Metagenome	244	Y
F079902	Metagenome	115	N
F099043	Metagenome / Metatranscriptome	103	N
F104876	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209472_100005111	F099043	GAG	LAVVVLVMAGALTYLLIPPLTIDVSGVVSIQSAYQVNFDSLSQFPYSVRIDAAGRYSISIPNQQSYAVFLYLEGSSGNGLAALLRCGTIDLYQTTKLGSAYNYDIVPGQCS
Ga0209472_100005118	F016790	N/A	LTGEKSDATAGALPTSYPKILLNVALVLAAVTAILHLYIGIWVYGIPLGVPLILIGLVYLGGIGLVAANNRRDLWLKIGIYWVVIVIVLWAASAAVNAPNTNIALAYVAKAAEFVLLGILLRIRTARSYGIKSGIGN
Ga0209472_100005156	F104876	GAG	VNYGRAIATIERPTAEATDLRSRLKVQVEIVATGIVVPSLGMPRERPTGRHAKLAEQHKKRSTETDLDKDSGETSEGNEFGSVSLARAWRANGSSHERTRSAMGKPAGLELAIRRKLPSLFRSGHTLIYRSAVAQQASADSPITSRIANP
Ga0209472_100005168	F079902	GAG	LRFLAVTVAQRPATLNYDEMPFYCHTHEPVYFTRDKKRERFEKLVRWWNDAHKLAIEYYPDATHFFDVGTYYLGQTRSLRQLVLRYERLQCPEIILAGNVLYRKNVGPFQLRGTYDTLGFPELVELFGVGLRWSRSGNRLVQLSYVSQPFIYPVECWQKHPFHVRTGIEKDEDIPIWYMDFCDESGAPIFVDLGIRFYRDET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209472_1000051

Overview

Ecosystem & Geography

Associated Families

Sequences