Scaffold Ga0209470_1000331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209470_1000331

Scaffold Ga0209470_1000331

Overview

Basic Information
Taxon OID	3300026324 Open in IMG/M
Scaffold ID	Ga0209470_1000331 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37973
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (45.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009776	Metagenome / Metatranscriptome	313	Y
F048407	Metagenome / Metatranscriptome	148	N
F082904	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100033140	F048407	AGG	MNQEEILKKTNDLGLTTTPEIINQISDMVSKIAVDTMLSAGEVEALTNIMILKACDTALLDKRTIITVNDVLSSLNFVCVPFFFPCAKSNILENSRITASVITPSDVNLLESLGITKNDELDVTPTTEIANKAVSYLKGKVPSMDISSHDFELFSKRIEIWKLQANILSTLNK
Ga0209470_100033143	F009776	N/A	MTKQKKLFNKKGDSVEIKEDGKDVTLTVQYTTKVEPTVATPEDNFNDLVSVYERTGFTEEPRQ
Ga0209470_100033144	F082904	GAGG	LKLYTIALFLAPLLLINSGYAGSNDLIGTYEGKGIFSIEDMSATKKGSDYKFIGYVHNISNKTLYISDIIMEMFNSKDKLIQLIRIGGGIVIESGEKLPYKVIAHDVNFSHLDHYVVTVLNTNKSPDQLFQKVFSQVY

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