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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026324 Open in IMG/M |
| Scaffold ID | Ga0209470_1001688 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16142 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013998 | Metagenome / Metatranscriptome | 266 | N |
| F014491 | Metagenome / Metatranscriptome | 262 | N |
| F016384 | Metagenome / Metatranscriptome | 247 | N |
| F019978 | Metagenome | 226 | N |
| F040025 | Metagenome | 162 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209470_100168815 | F019978 | GGA | LPEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIQSDQLPKEERKIGEEQGFCKCAKNAPKP |
| Ga0209470_100168816 | F040025 | AGG | LNSENYESPEQLLLSDPVRRKALELFEHEQKITEEEYNFGELFARILWERDWTDKLASIIGRIRTRFRLRNTDTELSVELKALIPDMNEVAKAYDEMTSGYKEFIRTVL |
| Ga0209470_10016884 | F016384 | GGA | LPAQDPLVSSVDVDVLRQVSMSLTRNLDFCQSGDGSKAWSEVLGLREDFKSHLAWVMGLGRLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVAAASITYTTRDIPELLRLTSAVKRFRELLSKTMSQWSSKLDRKDSPPAPKGS |
| Ga0209470_10016888 | F014491 | AGGAG | VTPGSPKGSWHNTAMILLVLASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERMKLQVTLTIATLLWLVAVVMIAQTAEPFTFAASTAVLRYLFLVGIALFTTLVVMYSTATIEATRQRLMAERAAKSSQPGRTTD |
| Ga0209470_10016889 | F013998 | GAGG | LKMHRLLSLLAFVLAMIGGLLVVVSALGGLERLSIGSLAVNGLVFLFGLGAILGGWLIYTGIRKLGGIITLLAGIILFVLTGGAGTSVLLVIVAGVLGLVAAEMKPWWAFWR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |