Scaffold Ga0209470

Basic Information
Taxon OID	3300026324 Open in IMG/M
Scaffold ID	Ga0209470_1004484 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026324 Open in IMG/M

Scaffold ID

Ga0209470_1004484 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9314
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9314

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F015710	Metagenome / Metatranscriptome	252	N
F019108	Metagenome	231	N
F024389	Metagenome	206	Y
F031050	Metagenome	183	N
F035691	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100448410	F031050	N/A	MVAFGHQTFDLLDGEAKERGVTVQELLRAVIIPDWFRTHGELLTKITMPEARPRIESLTKPEPSLDQGSKFHSNRLYLV
Ga0209470_100448414	F024389	GGA	MKKRKFLSLVIVLAIVIVTAILGYIYYAYIPRVLIDDTQTLKENHIWQFDLFVLGNRNVNITVSTAQYLVYVTFWYQQNSAATTYLINKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGETVTTVVHVEVTS
Ga0209470_100448415	F035691	GAGG	LVELWKLNNIFKLFLLSFTAVFLFLIFVLSEIQVSQYLLIVLAAGTIVYLVISFRAIPGSQGPPTTPQHLHLPSRIHLLTIILIFSLFVSSYVIARTLTTPSPFQLVKFQYLVLPNGEVLSMSPLQPSNECAWLESMNVTTQQRARQLGLPDCDYVAWYHRTSPPTLFLEFQNFTELTYNLSNTTARSTGSELLCFSLSSQSFQCWVPPARVSHLK
Ga0209470_100448416	F015710	N/A	VVFFVLAIISLSILTLYLITDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGI
Ga0209470_10044842	F019108	GGA	LLTRIEVSKKQPGLLHFPGLGHFLVVVIFTGIEIVGLIEWLAISNGENHTAVLGQSYPVLQLGAISSQIGMTGFAAIVLAVFLLVEHIITQVDATGRFASGKQLVEILTFSSLESVIWLVWLELIPVNGILAITFFLVALFVEHHIADNVKKGLSFFKLSSTRAVFVGLLVLTISEVIGAVVWVGNQNLLAVLVGGSLLEHYIARNVGLIK
Ga0209470_10044846	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDLIAPVTGRYDLVLRLKPNTPHNVYQTVKEIRNISDVITTDTHTGFDGIQPTKKFENQMALGVSLLTCEHTTSENVIKQLSTIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209470_1004484

Overview

Ecosystem & Geography

Associated Families

Sequences