NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1013746

Scaffold Ga0209470_1013746


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1013746 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4661
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10137464F016387GAGGMTLAPTRSMLELKPTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKASKFGFIQVPTSLVEKVFSILSDEEARELGREAGTNTLPEMVLFWFKKFNPENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETLETDGQVVATIIRPLTGLASEHKDAPLIPSFAGAKNGRGYKR
Ga0209470_10137466F022177GGCGGMSDVKNRIQENYRWTAYMKLKGQTWARKEEEILDEFDSFVQSLRGVGVDYNIIVMVKGRVPRQVHSEYKTREAKAEVSREGSGA
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