NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1025328

Scaffold Ga0209470_1025328


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1025328 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3127
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012334Metagenome281Y
F015579Metagenome / Metatranscriptome253Y
F019106Metagenome231N
F035244Metagenome172N
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10253281F035244GAGGMSKRSGVNFPRINLISLLAGALALASVFLPWWGMDASGFGSSVFSRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTWNIRPLIGSFILSVLTPIAYLGVVSYAVANSCGGQSNCLSGPFGTETVFGITLNWGFQIGFYLYLFAGALTLVGLGFHRIFHKTTPARETLQASAGTN
Ga0209470_10253282F015579GGALGSDSKKPPRPRHRFSFSGPSEQPKGSSVPRTANVTRDDILNSLTKHAHPQEPEETVPKTEEAAQFQGPNETAVEVRARNRGSARGALVIFLGGFVAVWLYGYVTGAYEIPYLRGVTQNPAVQVGVQLASSNPILFGAVSLSVLLGALYLLHRKKN
Ga0209470_10253283F097102GAGGLEVEVYNCGCKVRIYEVEFGESKNDLTERPIVISDYSPCSKHRNARRIPPEEARLLKVRGEHEAFLNE
Ga0209470_10253284F019106AGCAGMASQVPLLTLAKFLVLIGGIVLLVGGILQAIDVRSLTDFGTNLARLGGFTGIVVGVLVGILALVGAREVANPAWSLILLILCLFVGSLGGILVFIGGLIGLVAHYVKV
Ga0209470_10253285F012334N/ALSEINLVMGALFFVYPSLVIGLWPWTVKALAVRFIGAIFLAIAFGCWSALRAKMWQRAKILVLVGGTFFGITSIVSIVLAISQGGGYVISTWTGYFLVASLGNFYLLNRYGWPRKPQDRLGPGRPWKTARWFFRIQSIVVGVFGIMMLLVPDVAQHEFWPWRVLTPTLQMFAGLFLATCLATSWASLQTDIGRIRVLLPLDVIFPSLALLAVGIHWDVISIESPGALVTGVWIFIYAFVAIGSAYLYFSARKTRLM
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