NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000037

Scaffold Ga0209152_10000037


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000037 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67051
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (61.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F081191Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000003747F031439AGGMYVIPLVLIVLLALIAVAWSPVFALVFFVIGFIAFLAYAGLNRRADEKLTPPEQPGRQPQHEAQGDTGLWGERKA
Ga0209152_1000003771F016854AGGMARSGLKTLPKPGEVWLSCPPYLMMARIVDVDLASEPPVVSYELHDDDGSLLQAVEHATLDGGWWRTFQRLEPRFG
Ga0209152_1000003773F081191N/AVSPRRALPTPEQIVAAIVALADDGFCRRSELAQRFPGLGARDLRRALRRAVAQGLVIERRGPDGGFHLAVSSEGWDLHRSG
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