NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000064

Scaffold Ga0209152_10000064


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000064 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53417
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (70.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011377Metagenome291Y
F024519Metagenome205N
F079881Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000006428F024519GGALTQSVKPLFIKQSAYLRVPKDVAELIDIMGAPTGAVELRIDEQGCALVYTFAKQSRAITEEPEPVEVLVAAQ
Ga0209152_100000643F011377GAGMAVTTHVSVRPRSCYLPGHRRLRTQISTLFHETVNDCFRNALDGMGPTVRDVIYDLLAKKGIEQSEISSRFDDVVAVLMDSLGASARVLIYRTMTLLCQEYQVRADFSYQDSLRDRMVLLRDRVVADHLYPRRVQRNDPVFSTPNTAHFAQNPGATLSGGK
Ga0209152_1000006443F079881GAGGVIEVKVAVASWRLAALAAVDWLTRHDFATACVAVAVKVRTTVEDFGDEPEMSVTIPTARAKPFVVSSVSVGLPQSPFVAPLTESVATGAVVPADMAIYLKPQVADGAHTPPVGVSPDVTCWTHSAPAL
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