Scaffold Ga0209152

Basic Information
Taxon OID	3300026325 Open in IMG/M
Scaffold ID	Ga0209152_10000093 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026325 Open in IMG/M

Scaffold ID

Ga0209152_10000093 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44453
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (58.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

44453

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (58.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001912	Metagenome / Metatranscriptome	618	Y
F002008	Metagenome / Metatranscriptome	604	Y
F006382	Metagenome / Metatranscriptome	374	Y
F007303	Metagenome / Metatranscriptome	353	Y
F017200	Metagenome	242	Y
F018153	Metagenome	236	Y
F050273	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000009312	F006382	N/A	LSRPQTRLVDELFALDSRIRYVALLDRNSKLLESRMRSNVMSLTPETYDRKFMGSVPPMILDTLSQLENQCGPLAHISIQYQKVDLIIFPHNNQIVAISLEPGPLEPILRKLRDSLNLHIHI
Ga0209152_1000009323	F050273	GAG	MSYNLLPDQEFALLQLLLYIFSFVTLIMIFLYIAAERPGEGKKKVEEEEE
Ga0209152_1000009326	F002008	N/A	MAVDKKVLKTCVVCKRKFLGWFSEKYCSDDCRIEGTRLKNRNRQRKGRKVLDLREGAISQQLGELGLGDTQYPMYNHELVTTMYANVSLYHGRDGKRHVRSYYDLVREIAKLNGGDTSKILARLAPREQN
Ga0209152_1000009331	F018153	N/A	MFYFQTMRVASIFSRRERIVLALLAIAVVTAVTYGVVTYQTPYGCGPDGVAAGPGIDLQVLAKPCLYIYFTGIVGGSALLILLIPVPEKKAKEP
Ga0209152_1000009336	F017200	GGA	MQPVTYTVAKGLRAGAVGGFIGSIVLGITGELGAISMNQELFYTTIAKKLGLGDYSVLGGWTLHFLVGIIAGSMFIGATAAIRRFILTTMKKALWVGILGGIAIWIVVYVPVTGILIPGDLTDTTFAVGTFVLHLLYAVVTAIVSLSLLRRTIKTKTAA
Ga0209152_100000934	F001912	AGGCGG	MSLSQWDEGSDSDHVTGLKRDIWLVGYCKILAWRGAKLPRYGREGAVEVRPFPAKKRLCVSMAQGLSGEAMKGNPTTTVIPGVDESKPSP
Ga0209152_1000009345	F007303	N/A	MSSALRTKEFLEFQQTLKDLENQLRKLLKEASANGLSETTRNMTGRVYNLAERANQIQPPETRNQSTTNQSVLEKLPEQFEEDFGKFKGLVTFVERVRKQHYNATGHNFGRTYGSFGTDELSPGRHHGKSFISTLEIRCDACGSESPQSERRDYPIHVLLHDRGQWEVCTGQSDCECQSYEGKGVRISVNLSPEKTGKGKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209152_10000093

Overview

Ecosystem & Geography

Associated Families

Sequences