NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000094

Scaffold Ga0209152_10000094


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000094 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44427
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (74.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008999Metagenome324Y
F011834Metagenome286Y
F026533Metagenome / Metatranscriptome197N
F036188Metagenome / Metatranscriptome170Y
F104892Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_100000944F036188N/ALSEKISPQILREARTRQRDERWLNSASTPTLRRYHGKYVAVKNRRILASSPTMKGLYEKLDKLNPGMVLITRIEKPSLLVYVEFH
Ga0209152_1000009447F104892AGGMTTAFKNWHSLAVGAVLLAFSVFLTSTAFGALKTAQTALQGWAMLVIAGYAFVSAIFLGASPLSENNTLTESFPGVFDHFKSFLVGGLFYAIGNFLVTVEASNLGAPEQVLTLAVALIIGGALTLVAVLVAVAAAFVRPRK
Ga0209152_1000009448F026533GGCGGMPIEKKRLSKKDVQKFDPTPLYLYTEKDSLNRVTVLKESNKDAYLIAGRYSGYDNEHRLYTSLTEEESKEIERLVRIGRKDATISFL
Ga0209152_1000009451F011834GAGMVIEADFYRIRLRFKRLFADPAIFDDQKNAVRRFLGYSSSSNDQTDIYQITDDISPSDNVGKSPEVAGTARYVHGGRVVRSEYLENANVTLEYADFGSGLLPSGHQKIWKRQKWGRMSFNIEEFHHEHLRIEIPAIPELYEMLRVRADPTTLVDVELPELPDYFFRSAVGYLETRLKRLAERESQTIDIYVARDLLPEEKQALERRLTRPSTKSTIYILLSKTEGSATL
Ga0209152_100000949F008999AGGALTAYSVHATRVAKKFEWFGMTIVKRYLTRNKDSRDLRDVHSNPEFYDKGIDLILNLPNAQKRTIDLKVDSYIGSDPSRKIRGLCNPDSGFILLETISQLQYDRSRKVSTNGTLLARQKADAPGWFFTSSADEVYYYFLALLNAENQLNPLYSEYVELVKGNQPTDEVENRLLRELRVDRDLLVSFSLSDARAWYDTAPETVFHGYAPAPSPSYLTLSKRVKRDLFISNGIGRSHGSIFSLVKPSSVSR
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