NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000546

Scaffold Ga0209152_10000546


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000546 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16771
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001966Metagenome / Metatranscriptome610Y
F031423Metagenome182Y
F057250Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000054616F031423GAGGMAATEGNGFSVRAQPARVRVAPDEYLRCPNCGSTDLKKVSLAYQEGLFYTAARTRLRAVGVGSCGPDFVIGKATTRGFHQSVLSKQLTPPVKWSYRKLILWWVVVFLSIGWIVFYINTITKNSAAVFSPPLVLWSGLSAVTFLLLLVFFWRHNQSTHKRRYSQWERSLLCQRCGTLTEQE
Ga0209152_1000054623F001966N/AMEKTDPYAEWVLFATKLDPGEPPLAADEELVSAARTAWPHVLAHVRHRLLDKELGRERRALAAEIWDRVLVSVAKTRLRNKDLRSPIMDLESYLIGVFHHRFNRTLKKEQKRAETIEAFSSVLDLEQFAAATDAEWAEHLERAIAADQITDRMNPWMRKVWQRRQCDYSWKAIAAWLGITEQQAKMKFYYGLQKIRQSIMQSVKDPKSYKATEVKGRQT
Ga0209152_100005466F057250GGTGGVFLSIGWIVFYINTITKNSAAVLSPPLVLWSGLSAITFLLLLVLFWRHNQFAYKRRYSQWERSFLCQRCGTLTEQEF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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